NEWS.md
autothresholdr 1.1.02018-01-23th for thresholds.threshed_arr for thresholded arrays.stack_threshed_arr for stack-thresholded arrays.arr_mask for a mask of an array.EBImage package from Bioconductor. EBImage is a great package but CRAN packages are easier to install if they depend on CRAN packages only. Now ijtiff is used instead.can_be_integer() is gone. Use checkmate::check_integerish() instead.detrendr package.autothresholdr 1.0.0rJava (and hence java) dependency has been removed. All functions which used to be in java are now done in Rcpp.fail arguments of auto_thresh_apply_mask(), mean_stack_thresh() and med_stack_thresh() now work like the na argument of nandb::WriteIntImage().auto_thresh_mask() and auto_thresh_apply_mask() now have the abbreviations mask() and apply_mask().ignore_na argument for NA handling.autothresholdr 0.6.02017-07-05"Huang2" which is very similar to (but not the same as and hence should not be assumed to give the same results as) "Huang" and is much faster when applied to 16-bit images.mean_stack_thresh() can now handle thresholds between 0 and 1.ignore_black and ignore_white instead of ignore.black and ignore.white to comply with tidyverse style guide.ignore_black and ignore_white options to mean_stack_thresh() and med_stack_thresh().