threshed_arrfor thresholded arrays.
stack_threshed_arrfor stack-thresholded arrays.
arr_maskfor a mask of an array.
EBImagepackage from Bioconductor.
EBImageis a great package but CRAN packages are easier to install if they depend on CRAN packages only. Now
ijtiffis used instead.
can_be_integer()is gone. Use
rJava(and hence java) dependency has been removed. All functions which used to be in java are now done in
med_stack_thresh()now work like the
auto_thresh_apply_mask()now have the abbreviations
"Huang2"which is very similar to (but not the same as and hence should not be assumed to give the same results as)
"Huang"and is much faster when applied to 16-bit images.
mean_stack_thresh()can now handle thresholds between 0 and 1.