Changelog

Source: NEWS.md

2021-05-16 nandb 2.1.0

MINOR IMPROVEMENTS

  • No more messages from ijtiff I/O.

BUG FIXES

  • Insist on bug-fixed autothresholdr.

2021-04-21 nandb 2.0.8

BUG FIXES

  • Insist on bug-fixed filesstrings >= 3.2.
  • Remove LazyData from DESCRIPTION (was causing CRAN note).

2020-05-08 nandb 2.0.7

BUG FIXES

  • Cope with ijtiff not working on 32-bit Windows.

2020-03-16 nandb 2.0.6

BUG FIXES

  • Fix a failing unit test.

2019-08-22 nandb 2.0.5

BUG FIXES

  • skip_on_cran() tests that allow for different C++ <random> implementations (doing these on Travis, AppVeyor and R-hub is enough).

2019-07-08 nandb 2.0.4

BUG FIXES

  • Exclude a test on CRAN oldrel.
  • Insist on latest, bug-fixed ijtiff v2.0.2.

2019-06-28 nandb 2.0.3

BUG FIXES

  • Fix tests on CRAN Solaris and Windows oldrel.
  • Insist on latest, bug-fixed filesstrings v3.1.5.

2019-06-17 nandb 2.0.2

BUG FIXES

2019-05-31 nandb 2.0.1

BUG FIXES

  • Require necessary versions of glue and filesstrings and newest, least buggy ijtiff, autothresholdr and detrendr.

2018-11-11 nandb 2.0.0

MAJOR CHANGES

  • Robin Hood detrending is now used instead of exponential smoothing detrending. This is a breaking change.

NEW FEATURES

  • The timeseries functions now have the option to overlap for better time resolution.
  • A pkgdown website!

Unreleased nandb 1.1.0

NEW FEATURES

  • matrix_raster_plot() is back. I thought it didn’t really fit but a user said they missed when it was gone so it’s back now.

2018-05-08 nandb 1.0.1

BUG FIXES

  • Fix issues on CRAN linux devel clang.

2018-04-27 nandb 1.0.0

NEW FEATURES

  • The package is now peer-reviewed and published in the journal Bioinformatics. See citation("nandb").
  • The package style is now in accordance with the tidyverse style guide.
  • brightness() and number() now include options to set offset, S-factor, readout_noise and gamma correction terms.
  • brightness() and number() now enable calculation of both definitions (“B” and “epsilon”; “N” and “n”) of brightness and number.
  • Detrending is outsourced to the detrendr package. This new package makes detrending more accurate and much faster.
  • TIFF I/O and graphics display() are now outsourced to the ijtiff package. This means R users no longer have to tell nandb how many channels are in the images.
  • The package now has its own S3 class system.

BUG FIXES

  • Kmer calculations are no longer possible. The way in which they were done was over-simple.

2017-07-11 nandb 0.2.1

BUG FIXES

  • Compatible with filesstrings 1.1.0.

2017-05-29 nandb 0.2.0

  • The first version that I consider CRAN-worthy.