Changelog

Source: NEWS.md

detrendr 0.6.16

BUG FIXES

• Dynamically generate PKG_CXXFLAGS at compile time using RcppParallel.

detrendr 0.6.152023-03-04

BUG FIXES

• Insist on newest, bug-fixed filesstrings, Rcpp and RcppParallel.

detrendr 0.6.142021-05-16

BUG FIXES

• Simplify the testing of dir_detrend().

detrendr 0.6.132021-04-21

BUG FIXES

• Remove LazyData from DESCRIPTION (was causing CRAN note).

detrendr 0.6.122021-02-08

BUG FIXES

• rfromboxes() and rtoboxes() needed to floor the argument n. Lack of doing so was causing them to hang.

detrendr 0.6.112021-01-13

BUG FIXES

• Allow the answer for l in a test to be either 17 or 18.

detrendr 0.6.10

BUG FIXES

• Insist on bug-fixed filesstrings >= 3.2.

detrendr 0.6.92020-09-03

BUG FIXES

• Fix for magrittr 2.0 (which no longer allows you to call return(.) on a magrittr dot).

detrendr 0.6.82020-08-03

BUG FIXES

• An image needed for the tests is no longer included in ijtiff so detrendr needs to have it itself.

detrendr 0.6.72020-06-24

BUG FIXES

• Skip a few tests on CRAN (necessary because CRAN has so many different machines with various RNG implementations).

detrendr 0.6.62020-05-08

BUG FIXES

• Cope with ijtiff not working on 32-bit Windows.

detrendr 0.6.52020-03-16

BUG FIXES

• ggplot2 needed to be in Suggests because it is used in a vignette.

detrendr 0.6.42019-07-08

BUG FIXES

• Insist on latest, bug-fixed ijtiff v2.0.2.

detrendr 0.6.32019-06-29

BUG FIXES

• Ignore a test on CRAN mac (it’s fine on travis mac).
• Insist on latest, bug-fixed filesstrings v3.1.5.

detrendr 0.6.22019-06-15

BUG FIXES

• Demand latest, least buggy filesstrings, ijtiff and autothresholdr.
• Permanently fix the issues that were temporarily fixed in the previous version (R 3.6 has now landed).

detrendr 0.6.12019-04-13

BUG FIXES

• Require necessary version of glue.
• Temporary fix for upcoming R 3.6 which patches base::sample(). A more permanent fix should be provided when R 3.6 has landed.

detrendr 0.6.02018-11-09

NEW FEATURES

• A pkgdown website!

MINOR IMPROVEMENTS

• Robin Hood parameter finding is now repeated several (at least 9) times to find a sensible consensus value.
• Robin Hood parameter finding includes an adjustment step to avoid over-estimating the number of swaps required.

detrendr 0.5.2

BUG FIXES

• Detrending was not working well for images which had dimension 1 in x or y.

detrendr 0.5.12018-04-24

BUG FIXES

• Fix tests for CRAN fedora and mac.

detrendr 0.5.02018-04-19

NEW FEATURES

• The package no longer depends on RSAGA, making it lighter.
• Robin Hood detrending has been added.

detrendr 0.4.02018-02-18

NEW FEATURES

• Add the option to detrend for the purpose of FCS or FFS.

detrendr 0.3.0

NEW FEATURES

• Batch processing: detrend an entire folder with the likes of dir_detrend_exp().

BUG FIXES

• Asymmetric images caused R to crash.
• NAs in simulated brightnesses were needlessly causing the automatic parameter-finding routines to fail.

detrendr 0.2.02018-01-04

NEW FEATURES

• The process of extending time series prior to smoothing is not done any more. This was introducing errors for images with low counts. Smoothing works fine without it. Dropping this extension gives a massive improvement in detrending speed :-)
• TIFF I/O and image display are now taken care of by the ijtiff package.
• Images are now represented in the style of an ijtiff::ijtiff_img.

DEFUNCT

• This package no longer exports functions for TIFF I/O nor image display.

detrendr 0.1.02017-10-24

• The first CRAN-worthy version.